Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs74653364 chr2:239092544 G/A 0 485 30.77 33.27 5.7 KM Plot
PRAD rs74672805 chr2:178781389 T/C 4.16E-5 493 30.8 31.93 20.48 KM Plot
PRAD rs74696787 chr8:54170756 A/T 2.73E-6 492 31.32 26.93 49.93 KM Plot
PRAD rs747003 chr2:161916409 C/T 3.51E-5 494 29.17 32.03 29.23 KM Plot
PRAD rs74733103 chr12:10730969 T/C 5.1E-5 492 30.8 32.77 19.93 KM Plot
PRAD rs74738267 chr9:72828354 C/T 1.74E-5 494 30.8 31.35 22.45 KM Plot
PRAD rs74748452 chr2:107436981 A/G 1.49E-5 489 30.93 30.7 32.63 KM Plot
PRAD rs74780896 chr20:61667109 A/T 8.11E-6 484 31.07 30.27 24.15 KM Plot
PRAD rs74785906 chr10:99404118 CAAAA/C 5.79E-6 491 31.27 29.13 24.67 KM Plot
PRAD rs74793950 chr9:72912118 G/A 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs74796115 chr1:167505001 G/A 0.000153 486 30.8 31.12 15.77 KM Plot
PRAD rs74808088 chr1:1158975 A/C 2.49E-10 487 31.27 30.73 13.73 KM Plot
PRAD rs74847642 chr11:129941961 T/C 1.17E-5 492 30.87 33.13 22.67 KM Plot
PRAD rs74855146 chr2:178804427 G/A 4.23E-5 493 30.78 31.93 20.48 KM Plot
PRAD rs74930764 chr1:1157991 G/A 3.49E-9 490 31.27 30.73 13.73 KM Plot